Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SERP0595 | uvrB | SERP0595 | SERP0426 | Daunorubicin resistance protein DrrC, putative; Identified by similarity to EGAD:39654; match to protein family HMM PF00005. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.974 |
| SERP0595 | uvrC | SERP0595 | SERP0729 | Daunorubicin resistance protein DrrC, putative; Identified by similarity to EGAD:39654; match to protein family HMM PF00005. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.765 |
| SERP0725 | SERP0726 | SERP0725 | SERP0726 | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | 0.861 |
| SERP0725 | mutS2 | SERP0725 | SERP0727 | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.603 |
| SERP0725 | trxA | SERP0725 | SERP0728 | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | Thioredoxin; Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions (By similarity). | 0.742 |
| SERP0725 | uvrC | SERP0725 | SERP0729 | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.715 |
| SERP0726 | SERP0725 | SERP0726 | SERP0725 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | 0.861 |
| SERP0726 | mutS2 | SERP0726 | SERP0727 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.950 |
| SERP0726 | trxA | SERP0726 | SERP0728 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | Thioredoxin; Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions (By similarity). | 0.777 |
| SERP0726 | uvrC | SERP0726 | SERP0729 | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.781 |
| SERP0731 | SERP0732 | SERP0731 | SERP0732 | Succinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P08065; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811. | Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384. | 0.999 |
| SERP0731 | sdhC | SERP0731 | SERP0730 | Succinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P08065; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811. | Succinate dehydrogenase, cytochrome b558 subunit; Identified by similarity to EGAD:20778. | 0.999 |
| SERP0731 | trxA | SERP0731 | SERP0728 | Succinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P08065; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811. | Thioredoxin; Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions (By similarity). | 0.588 |
| SERP0731 | uvrC | SERP0731 | SERP0729 | Succinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P08065; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.722 |
| SERP0732 | SERP0731 | SERP0732 | SERP0731 | Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384. | Succinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P08065; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811. | 0.999 |
| SERP0732 | sdhC | SERP0732 | SERP0730 | Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384. | Succinate dehydrogenase, cytochrome b558 subunit; Identified by similarity to EGAD:20778. | 0.999 |
| SERP0732 | trxA | SERP0732 | SERP0728 | Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384. | Thioredoxin; Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions (By similarity). | 0.476 |
| SERP0732 | uvrC | SERP0732 | SERP0729 | Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.722 |
| mutS2 | SERP0725 | SERP0727 | SERP0725 | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | Bacteriocin production protein, putative; Identified by match to protein family HMM PF02674. | 0.603 |
| mutS2 | SERP0726 | SERP0727 | SERP0726 | MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | DNA-dependent DNA polymerase family X; Identified by match to protein family HMM PF00966; match to protein family HMM PF02231; match to protein family HMM PF02811. | 0.950 |
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