Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SERP0834 | SERP0835 | SERP0834 | SERP0835 | Conserved hypothetical protein; Identified by similarity to OMNI:SA1286; match to protein family HMM PF04296. | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | 0.981 |
| SERP0834 | infB | SERP0834 | SERP0836 | Conserved hypothetical protein; Identified by similarity to OMNI:SA1286; match to protein family HMM PF04296. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.972 |
| SERP0834 | nusA | SERP0834 | SERP0833 | Conserved hypothetical protein; Identified by similarity to OMNI:SA1286; match to protein family HMM PF04296. | N utilization substance protein A, putative; Participates in both transcription termination and antitermination. | 0.973 |
| SERP0834 | rimP | SERP0834 | SERP0832 | Conserved hypothetical protein; Identified by similarity to OMNI:SA1286; match to protein family HMM PF04296. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.969 |
| SERP0834 | rpsB | SERP0834 | SERP0823 | Conserved hypothetical protein; Identified by similarity to OMNI:SA1286; match to protein family HMM PF04296. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.443 |
| SERP0835 | SERP0834 | SERP0835 | SERP0834 | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | Conserved hypothetical protein; Identified by similarity to OMNI:SA1286; match to protein family HMM PF04296. | 0.981 |
| SERP0835 | infB | SERP0835 | SERP0836 | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.991 |
| SERP0835 | nusA | SERP0835 | SERP0833 | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | N utilization substance protein A, putative; Participates in both transcription termination and antitermination. | 0.968 |
| SERP0835 | rimP | SERP0835 | SERP0832 | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.969 |
| SERP0835 | rplB | SERP0835 | SERP1828 | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.929 |
| SERP0835 | rplO | SERP0835 | SERP1812 | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.916 |
| SERP0835 | rplP | SERP0835 | SERP1824 | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.917 |
| SERP0835 | rpsB | SERP0835 | SERP0823 | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.958 |
| SERP0835 | rpsC | SERP0835 | SERP1825 | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.953 |
| SERP0835 | rpsD | SERP0835 | SERP1284 | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.933 |
| infB | SERP0834 | SERP0836 | SERP0834 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Conserved hypothetical protein; Identified by similarity to OMNI:SA1286; match to protein family HMM PF04296. | 0.972 |
| infB | SERP0835 | SERP0836 | SERP0835 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 30S ribosomal protein L7Ae, putative; Identified by match to protein family HMM PF01248. | 0.991 |
| infB | nusA | SERP0836 | SERP0833 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | N utilization substance protein A, putative; Participates in both transcription termination and antitermination. | 0.993 |
| infB | rimP | SERP0836 | SERP0832 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.957 |
| infB | rplB | SERP0836 | SERP1828 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.972 |
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