STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP0916Conserved hypothetical protein; Identified by similarity to OMNI:SA1380. (155 aa)    
Predicted Functional Partners:
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity (By similarity); Belongs to the SbcD family.
       0.816
sbcC
Exonuclease SbcC; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity (By similarity); Belongs to the SMC family. SbcC subfamily.
       0.816
cydB
Cytochrome d ubiquinol oxidase, subunit II; Identified by similarity to GP:4514629.
  
     0.741
SERP0848
ACT domain protein; Identified by match to protein family HMM PF01842.
  
     0.671
SERP0514
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0817; match to protein family HMM PF01934.
  
     0.633
SERP0252
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0581.
  
     0.631
SERP0523
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0826.
  
     0.619
ctaA
Cytochrome oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 1 subfamily.
  
     0.562
SERP1007
Conserved hypothetical protein; Identified by similarity to OMNI:SA1466.
  
     0.514
SERP0707
Conserved hypothetical protein; Identified by similarity to OMNI:SA1126; match to protein family HMM PF04238.
  
    0.500
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.