Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SERP0629 | pabA | SERP0629 | SERP0374 | Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Para-aminobenzoate synthase, glutamine amidotransferase, component II; Identified by similarity to EGAD:15630; match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 0.757 |
| SERP0629 | trpA | SERP0629 | SERP0943 | Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.672 |
| SERP0629 | trpB | SERP0629 | SERP0942 | Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.556 |
| SERP0629 | trpC | SERP0629 | SERP0940 | Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Indole-3-glycerol phosphate synthase; Identified by similarity to EGAD:18396; match to protein family HMM PF00218; Belongs to the TrpC family. | 0.750 |
| SERP0629 | trpD | SERP0629 | SERP0939 | Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.729 |
| SERP0629 | trpE | SERP0629 | SERP0937 | Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Anthranilate synthase component I; Identified by match to protein family HMM PF00425; match to protein family HMM PF04715. | 0.877 |
| SERP0629 | trpF | SERP0629 | SERP0941 | Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | N-(5'phosphoribosyl)-anthranilate isomerase; Identified by similarity to EGAD:40212; match to protein family HMM PF00697; Belongs to the TrpF family. | 0.600 |
| SERP0629 | trpG | SERP0629 | SERP0938 | Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Anthranilate synthase component II; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 0.946 |
| SERP0944 | femA | SERP0944 | SERP0946 | Identified by match to protein family HMM PF01965. | femA protein; Catalyzes the incorporation of amino acid(s) into the interchain peptide bridge of peptidoglycan, using aminoacyl-tRNA as amino acid donor. | 0.699 |
| SERP0944 | trpA | SERP0944 | SERP0943 | Identified by match to protein family HMM PF01965. | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.796 |
| SERP0944 | trpB | SERP0944 | SERP0942 | Identified by match to protein family HMM PF01965. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.790 |
| SERP0944 | trpC | SERP0944 | SERP0940 | Identified by match to protein family HMM PF01965. | Indole-3-glycerol phosphate synthase; Identified by similarity to EGAD:18396; match to protein family HMM PF00218; Belongs to the TrpC family. | 0.792 |
| SERP0944 | trpD | SERP0944 | SERP0939 | Identified by match to protein family HMM PF01965. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.792 |
| SERP0944 | trpE | SERP0944 | SERP0937 | Identified by match to protein family HMM PF01965. | Anthranilate synthase component I; Identified by match to protein family HMM PF00425; match to protein family HMM PF04715. | 0.792 |
| SERP0944 | trpF | SERP0944 | SERP0941 | Identified by match to protein family HMM PF01965. | N-(5'phosphoribosyl)-anthranilate isomerase; Identified by similarity to EGAD:40212; match to protein family HMM PF00697; Belongs to the TrpF family. | 0.790 |
| SERP0944 | trpG | SERP0944 | SERP0938 | Identified by match to protein family HMM PF01965. | Anthranilate synthase component II; Identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566. | 0.790 |
| femA | SERP0944 | SERP0946 | SERP0944 | femA protein; Catalyzes the incorporation of amino acid(s) into the interchain peptide bridge of peptidoglycan, using aminoacyl-tRNA as amino acid donor. | Identified by match to protein family HMM PF01965. | 0.699 |
| femA | trpA | SERP0946 | SERP0943 | femA protein; Catalyzes the incorporation of amino acid(s) into the interchain peptide bridge of peptidoglycan, using aminoacyl-tRNA as amino acid donor. | Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.731 |
| femA | trpB | SERP0946 | SERP0942 | femA protein; Catalyzes the incorporation of amino acid(s) into the interchain peptide bridge of peptidoglycan, using aminoacyl-tRNA as amino acid donor. | Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.731 |
| femA | trpC | SERP0946 | SERP0940 | femA protein; Catalyzes the incorporation of amino acid(s) into the interchain peptide bridge of peptidoglycan, using aminoacyl-tRNA as amino acid donor. | Indole-3-glycerol phosphate synthase; Identified by similarity to EGAD:18396; match to protein family HMM PF00218; Belongs to the TrpC family. | 0.731 |
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