Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SERP0953Peptide ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00528. (333 aa)    
Predicted Functional Partners:
SERP0952
Peptide ABC transporter, permease protein, putative; Identified by similarity to EGAD:9991; match to protein family HMM PF00528.
 0.999
SERP0951
Peptide ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005.
 
 0.998
SERP1994
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF00496.
 
 0.994
SERP0950
Peptide ABC transporter, ATP-binding protein, putative; Identified by similarity to EGAD:89055; match to protein family HMM PF00005.
 
 
 0.993
oppF
Oligopeptide ABC transporter, ATP-binding protein OppF; Identified by similarity to SP:P24137; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.946
oppC
Oligopeptide ABC transporter, permease protein; Identified by similarity to GP:10717145; match to protein family HMM PF00528.
 
 0.943
SERP2370
Peptide ABC transporter, permease protein; Identified by similarity to EGAD:128691; match to protein family HMM PF00528.
 
 0.942
SERP2369
Peptide ABC transporter, ATP-binding protein; Identified by similarity to EGAD:24096; match to protein family HMM PF00005.
 
 
 0.915
oppD
Oligopeptide ABC transporter, ATP-binding protein OppD; Identified by similarity to EGAD:24096; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.914
oppA
Oligopeptide ABC transporter, oligopeptide-binding protein; Identified by similarity to GP:10717143; match to protein family HMM PF00496.
 
 
 0.907
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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