Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
brnQ-1Branched-chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids (leucine, isoleucine and valine), which is coupled to a proton motive force. (447 aa)    
Predicted Functional Partners:
rnj2
Metallo-beta-lactamase family protein; An RNase that has 5'-3' exonuclease and possibly endoonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily.
      
 0.740
SERP0979
CbbQ/NirQ/NorQ/GpvN family protein; Belongs to the CbbQ/NirQ/NorQ/GpvN family.
  
    0.717
SERP0978
Conserved hypothetical protein; Identified by similarity to OMNI:SA1444.
       0.716
SERP0980
Conserved hypothetical protein; Identified by similarity to OMNI:SA1446.
       0.632
SERP0981
Conserved hypothetical protein; Identified by similarity to OMNI:SA1447.
       0.623
codY
Transcriptional regulator CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.
      
 0.410
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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