STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comGCcomG operon protein 3; Required for transformation and DNA binding. (105 aa)    
Predicted Functional Partners:
SERP1106
Conserved hypothetical protein; Identified by similarity to OMNI:SA1598.
  
  
 0.981
SERP1108
comG operon protein 2, putative; Identified by similarity to EGAD:21818; match to protein family HMM PF00482.
 
  
 0.980
SERP1109
Competence protein ComGA, putative; Identified by similarity to EGAD:12231; match to protein family HMM PF00437.
 
  
 0.977
SERP1104
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1420.
  
  
 0.973
SERP1105
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1421.
       0.883
SERP0417
comF operon protein 1, putative; Identified by similarity to EGAD:24480; match to protein family HMM PF00271.
 
  
 0.813
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.793
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
      
 0.784
SERP1115
Identified by match to protein family HMM PF01812; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.766
ychF
Conserved hypothetical protein TIGR00092; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
      
 0.760
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.