STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP1110Identified by match to protein family HMM PF00753. (207 aa)    
Predicted Functional Partners:
ldhD
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826.
  
 0.912
SERP2133
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.912
glk
Glucokinase; Identified by similarity to EGAD:33102; match to protein family HMM PF00480; match to protein family HMM TIGR00744.
  
  
 0.887
SERP1114
Identified by match to protein family HMM PF01694.
  
    0.886
SERP1115
Identified by match to protein family HMM PF01812; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.884
SERP1111
Conserved hypothetical protein TIGR00106; Identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106.
       0.883
SERP1113
Conserved hypothetical protein; Identified by similarity to OMNI:SA1605.
       0.883
SERP1109
Competence protein ComGA, putative; Identified by similarity to EGAD:12231; match to protein family HMM PF00437.
   
   0.872
SERP1104
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1420.
       0.845
SERP1106
Conserved hypothetical protein; Identified by similarity to OMNI:SA1598.
       0.845
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.