Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
SERP1114Identified by match to protein family HMM PF01694. (486 aa)    
Predicted Functional Partners:
SERP1115
Identified by match to protein family HMM PF01812; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.951
SERP1113
Conserved hypothetical protein; Identified by similarity to OMNI:SA1605.
     
 0.901
lytH
N-acetylmuramoyl-L-alanine amidase, family 3; Probably involved in cell-wall metabolism; Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family.
   
   0.890
glk
Glucokinase; Identified by similarity to EGAD:33102; match to protein family HMM PF00480; match to protein family HMM TIGR00744.
 
     0.889
SERP1111
Conserved hypothetical protein TIGR00106; Identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106.
  
    0.879
SERP1110
Identified by match to protein family HMM PF00753.
       0.875
SERP1104
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1420.
       0.786
SERP1106
Conserved hypothetical protein; Identified by similarity to OMNI:SA1598.
       0.786
SERP1109
Competence protein ComGA, putative; Identified by similarity to EGAD:12231; match to protein family HMM PF00437.
       0.754
rpmG-3
Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family.
  
    0.722
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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