Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SERP1121 | SERP1122 | SERP1121 | SERP1122 | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.999 |
| SERP1121 | SERP2081 | SERP1121 | SERP2081 | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | Adhesion lipoprotein, putative; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | 0.978 |
| SERP1121 | SERP2383 | SERP1121 | SERP2383 | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | 0.978 |
| SERP1121 | cshB | SERP1121 | SERP1124 | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | ATP-dependent RNA helicase, DEAD/DEAH box family; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | 0.770 |
| SERP1121 | fur | SERP1121 | SERP1120 | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | Transcriptional regulator, Fur family; Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes. | 0.921 |
| SERP1121 | nfo | SERP1121 | SERP1123 | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. | 0.793 |
| SERP1121 | sitB | SERP1121 | SERP0291 | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | 0.494 |
| SERP1121 | sitC | SERP1121 | SERP0290 | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | ABC transporter, substrate-binding protein; Identified by similarity to GP:1617430; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | 0.892 |
| SERP1121 | sodA | SERP1121 | SERP1119 | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.665 |
| SERP1122 | SERP1121 | SERP1122 | SERP1121 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | 0.999 |
| SERP1122 | SERP2081 | SERP1122 | SERP2081 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Adhesion lipoprotein, putative; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | 0.977 |
| SERP1122 | SERP2383 | SERP1122 | SERP2383 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | 0.978 |
| SERP1122 | cshB | SERP1122 | SERP1124 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ATP-dependent RNA helicase, DEAD/DEAH box family; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | 0.786 |
| SERP1122 | dnaK | SERP1122 | SERP1148 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.461 |
| SERP1122 | fur | SERP1122 | SERP1120 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Transcriptional regulator, Fur family; Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes. | 0.912 |
| SERP1122 | nfo | SERP1122 | SERP1123 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. | 0.792 |
| SERP1122 | sitB | SERP1122 | SERP0291 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | 0.943 |
| SERP1122 | sitC | SERP1122 | SERP0290 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | ABC transporter, substrate-binding protein; Identified by similarity to GP:1617430; match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | 0.827 |
| SERP1122 | sodA | SERP1122 | SERP1119 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.663 |
| SERP2081 | SERP1121 | SERP2081 | SERP1121 | Adhesion lipoprotein, putative; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family. | ABC transporter, permease protein; Identified by match to protein family HMM PF00950. | 0.978 |
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