STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP1330N-acetylmuramoyl-L-alanine amidase, family 4; Identified by match to protein family HMM PF01832. (283 aa)    
Predicted Functional Partners:
lyrA
Identified by match to protein family HMM PF02517.
    
 
 0.987
SERP1329
Conserved hypothetical protein; Identified by similarity to OMNI:SA1821.
 
     0.814
SERP0422
LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF05257.
  
  
 0.798
SERP2263
N-acetylmuramoyl-L-alanine amidase domain protein; Identified by match to protein family HMM PF01832; match to protein family HMM PF05257.
     
 0.778
SERP1331
Conserved hypothetical protein; Identified by similarity to OMNI:SA1826.
       0.767
SERP0043
Lysozyme domain protein.
     
 0.761
SERP1650
Prophage, amidase, putative; Identified by match to protein family HMM PF01520; match to protein family HMM PF05257.
      
 0.755
SERP0318
LysM domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF05257.
   
  
 0.698
SERP1212
Rod shape-determining protein MreD, putative; Identified by match to protein family HMM PF04093.
  
     0.664
lytH
N-acetylmuramoyl-L-alanine amidase, family 3; Probably involved in cell-wall metabolism; Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family.
  
  
 0.634
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.