Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SERP1395Amino acid ABC transporter, permease/amino acid-binding protein, putative; Identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726. (485 aa)    
Predicted Functional Partners:
SERP1394
Amino acid ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 0.999
SERP2003
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to EGAD:33113; match to protein family HMM PF00005.
 
 0.982
argG
Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.704
SERP1396
PTS system, IIC component, putative; Identified by match to protein family HMM PF02378.
       0.703
SERP2004
Amino acid ABC transporter, permease protein; Identified by similarity to EGAD:28090; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
0.643
argH
Argininosuccinate lyase; Identified by similarity to EGAD:108136; match to protein family HMM PF00206; match to protein family HMM TIGR00838.
  
  
 0.629
oppA
Oligopeptide ABC transporter, oligopeptide-binding protein; Identified by similarity to GP:10717143; match to protein family HMM PF00496.
  
 
 0.609
fruA
PTS system, fructose-specific IIABC components; Identified by similarity to GP:9501781; match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
  
  
 0.586
SERP2260
PTS system, fructose-specific IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
  
  
 0.586
femC
Glutamine synthetase FemC; Glutamine synthetase (GS) is an unusual multitasking protein that functions as an enzyme, a transcription coregulator, and a chaperone in ammonium assimilation and in the regulation of genes involved in nitrogen metabolism. It catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia. Feedback- inhibited GlnA also interacts with and regulates the activity of the transcriptional regulator TnrA. During nitrogen limitation, TnrA is in its DNA-binding active state and turns on the transcription of genes required for nitrogen assimilation. U [...]
 
  
 0.584
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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