Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| blaI-1 | blaR1-1 | SERP1459 | SERP1460 | Penicillinase repressor; Identified by similarity to EGAD:13370; match to protein family HMM PF03965. | Regulatory protein BlaR1; Identified by similarity to SP:P18357; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569. | 0.999 |
| blaI-1 | blaZ-1 | SERP1459 | SERP1461 | Penicillinase repressor; Identified by similarity to EGAD:13370; match to protein family HMM PF03965. | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | 0.703 |
| blaI-1 | mecR1 | SERP1459 | SERP2520 | Penicillinase repressor; Identified by similarity to EGAD:13370; match to protein family HMM PF03965. | Methicillin-resistance regulatory protein MecR1; Penicillin-interactive protein and potential antirepressor. | 0.865 |
| blaR1-1 | blaI-1 | SERP1460 | SERP1459 | Regulatory protein BlaR1; Identified by similarity to SP:P18357; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569. | Penicillinase repressor; Identified by similarity to EGAD:13370; match to protein family HMM PF03965. | 0.999 |
| blaR1-1 | blaZ-1 | SERP1460 | SERP1461 | Regulatory protein BlaR1; Identified by similarity to SP:P18357; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569. | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | 0.820 |
| blaZ-1 | blaI-1 | SERP1461 | SERP1459 | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | Penicillinase repressor; Identified by similarity to EGAD:13370; match to protein family HMM PF03965. | 0.703 |
| blaZ-1 | blaR1-1 | SERP1461 | SERP1460 | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | Regulatory protein BlaR1; Identified by similarity to SP:P18357; match to protein family HMM PF00144; match to protein family HMM PF00905; match to protein family HMM PF05569. | 0.820 |
| blaZ-1 | fusA | SERP1461 | SERP0188 | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.418 |
| blaZ-1 | gyrA | SERP1461 | SERP2548 | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.418 |
| blaZ-1 | ileS | SERP1461 | SERP0758 | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) (By similarity); Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.439 |
| blaZ-1 | mecR1 | SERP1461 | SERP2520 | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | Methicillin-resistance regulatory protein MecR1; Penicillin-interactive protein and potential antirepressor. | 0.591 |
| blaZ-1 | msrA | SERP1461 | SERP2272 | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | Peptide methionine sulfoxide reductase, putative; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.439 |
| blaZ-1 | msrA-2 | SERP1461 | SERP1000 | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.440 |
| blaZ-1 | norA | SERP1461 | SERP0353 | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | Quinolone resistance protein NorA; Identified by similarity to EGAD:18536; match to protein family HMM PF00083. | 0.414 |
| blaZ-1 | rpoB | SERP1461 | SERP0183 | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.410 |
| fusA | blaZ-1 | SERP0188 | SERP1461 | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | 0.418 |
| fusA | gyrA | SERP0188 | SERP2548 | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.654 |
| fusA | ileS | SERP0188 | SERP0758 | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile) (By similarity); Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.672 |
| fusA | rpoB | SERP0188 | SERP0183 | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.965 |
| gyrA | blaZ-1 | SERP2548 | SERP1461 | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Beta-lactamase; Identified by similarity to SP:P00807; match to protein family HMM PF00144. | 0.418 |
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