STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP1477ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (304 aa)    
Predicted Functional Partners:
SERP1478
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
  
 0.979
SERP1476
Conserved hypothetical protein; Identified by similarity to OMNI:SA1995.
     
 0.913
SERP1474
Conserved hypothetical protein; Identified by similarity to OMNI:SA1993.
     
 0.809
SERP1475
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.802
SERP2204
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    0.528
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.483
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
   0.472
SERP1479
Conserved hypothetical protein; Identified by similarity to OMNI:SA1998.
       0.471
modC
Molybdenum ABC transporter, ATP-binding protein ModC; Identified by match to protein family HMM PF00005.
 
     0.468
atpG
ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.463
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.