Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SERP1499Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1924; match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family. (74 aa)    
Predicted Functional Partners:
SERP1655
Conserved domain protein; Identified by similarity to OMNI:NTL01SA1925.
 
  
 0.920
SERP2515
Rhodanese-like domain protein; Identified by match to protein family HMM PF00581; match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
  
  
 0.546
scrR
Sucrose operon repressor; Identified by similarity to EGAD:43207; match to protein family HMM PF00356; match to protein family HMM PF00532.
     
 0.510
cscA
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
       0.503
SERP1186
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
   
 
 0.462
SERP1280
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
   
 
 0.462
SERP2067
Membrane protein, putative.
  
     0.402
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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