Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SERP1503Hypothetical protein; Identified by Glimmer2; putative. (43 aa)    
Predicted Functional Partners:
SERP1504
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SERP1505
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SERP1506
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01LL0750.
       0.773
SERP1507
Conserved hypothetical protein.
       0.757
SERP1508
Thioredoxin, putative; Identified by similarity to EGAD:44482.
       0.726
SERP1509
Hypothetical protein; Identified by Glimmer2; putative.
       0.607
nrdF-2
Ribonucleoside-diphosphate reductase 2, beta subunit; Identified by similarity to EGAD:37758; match to protein family HMM PF00268.
       0.545
SERP1501
Conserved hypothetical protein; Identified by similarity to EGAD:107864; match to protein family HMM PF00239.
       0.539
SERP1502
DNA-binding protein, putative; Identified by match to protein family HMM PF00249.
       0.539
SERP1511
Truncated ribonucleoside-diphosphate reductase 2 alpha subunit; Contains an intein; may be nonfunctional due to interuption.
       0.453
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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