STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP1514Hypothetical protein; Identified by Glimmer2; putative. (148 aa)    
Predicted Functional Partners:
nrdI-2
nrdI protein; Identified by match to protein family HMM PF02555; match to protein family HMM TIGR00333; Belongs to the NrdI family.
       0.773
SERP1513
Truncated ribonucleoside-diphosphate reductase 2, alpha subunit; Contains a 384 residue intein; identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; may be nonfunctional due to interuption.
       0.714
SERP1516
Hypothetical protein; Identified by Glimmer2; putative.
       0.682
SERP1517
Hypothetical protein; Identified by Glimmer2; putative.
       0.642
SERP1518
Conserved hypothetical protein; Identified by similarity to GP:2444088.
       0.633
SERP1512
HNH endonuclease family protein; This gene may be part of a small mobile genetic element because it disrupts the gene encoding the alpha subunit of ribonucleoside-diphosphate reductase 2; identified by match to protein family HMM PF01844.
       0.442
SERP1519
Hypothetical protein; Identified by Glimmer2; putative.
       0.412
SERP1520
Hypothetical protein; Identified by Glimmer2; putative.
       0.412
SERP1521
Hypothetical protein; Identified by Glimmer2; putative.
       0.403
SERP1522
Hypothetical protein; Identified by Glimmer2; putative.
       0.403
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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