STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP1642Conserved hypothetical protein. (2681 aa)    
Predicted Functional Partners:
SERP1639
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family.
 
    0.811
SERP1643
Hypothetical protein; Identified by Glimmer2; putative.
       0.781
SERP1644
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SERP1640
M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM TIGR01760.
 
    0.727
SERP1591
Conserved hypothetical protein; Identified by similarity to EGAD:107455.
  
     0.677
SERP1641
Conserved hypothetical protein.
  
    0.646
SERP1645
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02SA1962.
       0.636
SERP1646
Hypothetical protein; Identified by Glimmer2; putative.
       0.518
SERP1647
Hypothetical protein; Identified by Glimmer2; putative.
       0.518
xhlB
Prophage, holin, SPP1 family; Identified by similarity to EGAD:18887; match to protein family HMM PF04688; match to protein family HMM TIGR01592.
       0.494
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.