STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP1946Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (183 aa)    
Predicted Functional Partners:
SERP1945
Drug transporter, putative.
     
 0.832
SERP1944
Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM TIGR00711; Belongs to the major facilitator superfamily.
       0.762
SERP2262
Phage infection protein; Identified by similarity to SP:P49022.
 
  
 0.484
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.440
SERP1943
Hypothetical protein; Identified by Glimmer2; putative.
       0.437
SERP0012
Transcriptional regulator, Cro/CI family; Identified by match to protein family HMM PF01381.
  
     0.433
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.