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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fmhAfmhA protein; Identified by match to protein family HMM PF02388. (415 aa)    
Predicted Functional Partners:
SERP0329
Sugar efflux transporter, putative; Identified by similarity to EGAD:6822; similarity to EGAD:7093; similarity to EGAD:19549.
  
     0.667
SERP2120
Secretory antigen precursor SsaA-related protein; Identified by match to protein family HMM PF05257.
 
     0.653
SERP0668
Conserved hypothetical protein; Identified by similarity to OMNI:SA1090.
  
     0.638
ezrA
Conserved hypothetical protein; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family.
  
     0.625
SERP0973
Conserved hypothetical protein; Identified by similarity to OMNI:SA1438.
  
     0.623
SERP0761
LysM domain protein; Identified by match to protein family HMM PF05257.
  
     0.622
ssaA1
Secretory antigen precursor SsaA; Not known; immunogenic protein.
  
     0.619
SERP2136
Secretory antigen precursor SsaA; Identified by similarity to GP:8886398; match to protein family HMM PF05257.
  
     0.619
SERP0327
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0647; match to protein family HMM PF04167.
  
     0.617
SERP0311
Conserved hypothetical protein; Identified by similarity to OMNI:SA0715.
 
     0.599
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.