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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP2011IS256-like transposase; Identified by similarity to EGAD:22488; match to protein family HMM PF00872. (390 aa)    
Predicted Functional Partners:
bhp
Cell wall associated biofilm protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF00801; match to protein family HMM PF04650; match to protein family HMM PF05345; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
   
  
 0.760
garK
Glycerate kinase 2; Identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045; Belongs to the glycerate kinase type-1 family.
       0.491
SERP2013
Conserved hypothetical protein.
       0.434
SERP2010
Conserved hypothetical protein; Identified by similarity to OMNI:SA1738.
       0.422
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.