Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
garKGlycerate kinase 2; Identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045; Belongs to the glycerate kinase type-1 family. (383 aa)    
Predicted Functional Partners:
SERP0409
Glycerate kinase family protein; Identified by similarity to OMNI:NTL01SA0718; match to protein family HMM PF02595; match to protein family HMM TIGR00045.
  
  
 
0.926
aldA-2
Aldehyde dehydrogenase; Identified by similarity to EGAD:15875; match to protein family HMM PF00171.
   
 
 0.924
gpm
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
 0.913
pgm
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.907
SERP0516
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.905
SERP1729
Aldehyde dehydrogenase; Identified by match to protein family HMM PF00171.
   
 
  0.902
SERP0052
Identified by match to protein family HMM PF00300; Belongs to the phosphoglycerate mutase family.
     
 0.901
SERP2013
Conserved hypothetical protein.
       0.671
tadA
Cytidine/deoxycytidylate deaminase family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
 
    0.670
gldA
Glycerol dehydrogenase; Identified by similarity to SP:P32665; match to protein family HMM PF00465.
      
 0.509
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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