Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SERP2016Conserved hypothetical protein; Identified by similarity to OMNI:SA2440; match to protein family HMM PF00149; match to protein family HMM PF02549. (269 aa)    
Predicted Functional Partners:
SERP1329
Conserved hypothetical protein; Identified by similarity to OMNI:SA1821.
  
     0.658
SERP0261
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0583.
  
     0.568
SERP1306
Conserved hypothetical protein; Identified by similarity to OMNI:SA1796.
  
     0.448
SERP1863
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.420
SERP1179
Conserved hypothetical protein; Identified by similarity to OMNI:SA1670; Belongs to the UPF0473 family.
  
     0.416
isaA
Immunodominant antigen A, putative; Is able to cleave peptidoglycan; Belongs to the transglycosylase family. IsaA subfamily.
  
     0.416
SERP1402
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1742.
 
     0.404
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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