STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP2036Major facilitator superfamily protein; Identified by match to protein family HMM PF00083. (392 aa)    
Predicted Functional Partners:
SERP2037
Conserved hypothetical protein TIGR00245; Identified by similarity to EGAD:91417; match to protein family HMM PF03649; match to protein family HMM TIGR00245.
       0.805
SERP2038
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.805
tcaB
tcaB protein; Identified by match to protein family HMM PF00083; match to protein family HMM TIGR00710.
  
   
 0.525
bcr
Bicyclomycin resistance protein; Identified by similarity to SP:P28246; match to protein family HMM PF00083; match to protein family HMM TIGR00710.
  
   
 0.492
coaW
Conserved hypothetical protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
  
     0.433
SERP1781
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA2066; match to protein family HMM PF04183.
       0.426
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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