Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
depGamma-glutamyltranspeptidase; Identified by similarity to EGAD:45768; match to protein family HMM PF01019. (534 aa)    
Predicted Functional Partners:
capC
capC protein; Identified by similarity to EGAD:14793.
 
   
 0.984
capA
capA protein; Identified by similarity to EGAD:20151.
 
   
 0.978
capB
capB protein.
 
   
 0.934
SERP0528
Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. Belongs to the peptidase M17 family.
  
 
 0.930
gpxA-1
Glutathione peroxidase; Identified by similarity to EGAD:45646; match to protein family HMM PF00255; Belongs to the glutathione peroxidase family.
    
 0.909
gpxA-2
Glutathione peroxidase; Identified by similarity to EGAD:45646; match to protein family HMM PF00255; Belongs to the glutathione peroxidase family.
    
 0.909
SERP2195
Alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase, putative; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852.
     
 0.906
pxpA
LamB/YcsF family; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
     
  0.900
SERP2104
Hypothetical protein; Identified by Glimmer2; putative.
       0.875
gluD
Glutamate dehydrogenase, NAD-specific; Identified by similarity to EGAD:20751; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.855
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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