STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capAcapA protein; Identified by similarity to EGAD:20151. (357 aa)    
Predicted Functional Partners:
capC
capC protein; Identified by similarity to EGAD:14793.
 
  
 0.991
dep
Gamma-glutamyltranspeptidase; Identified by similarity to EGAD:45768; match to protein family HMM PF01019.
 
   
 0.977
capB
capB protein.
 
     0.960
SERP2104
Hypothetical protein; Identified by Glimmer2; putative.
       0.883
sdrH
sdrH protein; Identified by similarity to GP:8101009.
  
   
 0.724
SERP2063
Esterase, putative; Identified by similarity to SP:P22862.
 
     0.668
SERP2264
Cell wall surface anchor family protein.
  
     0.647
SERP0208
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
  
 0.608
SERP2015
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA2319.
  
     0.607
geh-1
Lipase; Identified by similarity to GP:2981225; match to protein family HMM PF04650; match to protein family HMM TIGR01168; Belongs to the AB hydrolase superfamily. Lipase family.
  
     0.563
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.