Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SERP2129Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF00678. (289 aa)    
Predicted Functional Partners:
SERP2338
Peptide synthetase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.670
SERP2130
Conserved hypothetical protein.
       0.539
SERP0244
Oxidoreductase, aldo/keto reductase family; Identified by match to protein family HMM PF00248.
  
 
 0.511
SERP2165
Pyridine nucleotide-disulfide oxidoreductase; Identified by similarity to EGAD:7958; match to protein family HMM PF00070; match to protein family HMM PF02852.
  
 
 0.481
SERP1356
Conserved hypothetical protein TIGR00278; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
      
 0.480
SERP2179
Choline/carnitine/betaine transporter; Identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; Belongs to the BCCT transporter (TC 2.A.15) family.
      
 0.480
SERP2279
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA2544.
   
  
 0.467
SERP0246
ABC transporter, substrate-binding protein, putative; Identified by match to protein family HMM PF04069.
      
 0.455
ebh
Cell wall associated fibronectin-binding protein; Identified by similarity to OMNI:SA1472; match to protein family HMM PF01468; match to protein family HMM PF02370; match to protein family HMM PF02524; match to protein family HMM PF04508; match to protein family HMM PF04650; match to protein family HMM TIGR01168.
  
   0.405
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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