Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SERP2136Secretory antigen precursor SsaA; Identified by similarity to GP:8886398; match to protein family HMM PF05257. (257 aa)    
Predicted Functional Partners:
SERP1383
Transcriptional regulator, Cro/CI family.
  
     0.650
femB
femB protein; Catalyzes the incorporation of amino acid(s) into the interchain peptide bridge of peptidoglycan, using aminoacyl-tRNA as amino acid donor.
  
   
 0.649
femA
femA protein; Catalyzes the incorporation of amino acid(s) into the interchain peptide bridge of peptidoglycan, using aminoacyl-tRNA as amino acid donor.
  
     0.633
sufB
FeS assembly protein SufB; Identified by similarity to OMNI:SA0918; match to protein family HMM PF01458; match to protein family HMM TIGR01980; Belongs to the UPF0051 (ycf24) family.
      
 0.625
fmhA
fmhA protein; Identified by match to protein family HMM PF02388.
  
     0.619
SERP0311
Conserved hypothetical protein; Identified by similarity to OMNI:SA0715.
  
     0.596
SERP0679
Conserved hypothetical protein; Identified by similarity to OMNI:SA1101.
  
     0.589
yvcD
yvcD protein; Identified by similarity to GP:5690062; match to protein family HMM PF00515.
  
     0.565
SERP2149
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.521
yycH
yycH protein; Identified by similarity to GP:6689208.
  
     0.513
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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