Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SERP2149Hypothetical protein; Identified by Glimmer2; putative. (336 aa)    
Predicted Functional Partners:
SERP2148
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA2241.
 
     0.943
tcaA
tcaA protein; Plays a major role in decreasing resistance to glycopeptide antibiotics; Belongs to the TcaA family.
  
     0.771
SERP1453
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1794.
  
     0.770
SERP2067
Membrane protein, putative.
  
     0.760
SERP2264
Cell wall surface anchor family protein.
  
     0.758
sdrH
sdrH protein; Identified by similarity to GP:8101009.
  
     0.746
yvcD
yvcD protein; Identified by similarity to GP:5690062; match to protein family HMM PF00515.
  
     0.743
SERP0337
Conserved hypothetical protein; Identified by similarity to OMNI:SA0742.
  
     0.742
atlE
Bifunctional autolysin; Endohydrolysis of the di-N-acetylchitobiosyl unit in high- mannose glycopeptides and glycoproteins containing the -[(Man)5(GlcNAc)2]-Asn structure. One N-acetyl-D-glucosamine residue remains attached to the protein; the rest of the oligosaccharide is released intact. Cleaves the peptidoglycan connecting the daughter cells at the end of the cell division cycle, resulting in the separation of the two newly divided cells. Acts as an autolysin in penicillin-induced lysis (By similarity); In the C-terminal section; belongs to the glycosyl hydrolase 73 family.
  
     0.734
SERP0406
Conserved hypothetical protein; Identified by similarity to OMNI:SA0802; match to protein family HMM PF04229.
  
     0.719
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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