STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP2198Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0238. (418 aa)    
Predicted Functional Partners:
SERP2197
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.839
SERP1650
Prophage, amidase, putative; Identified by match to protein family HMM PF01520; match to protein family HMM PF05257.
  
     0.685
SERP0043
Lysozyme domain protein.
 
     0.668
SERP0113
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.666
tagF
Teichoic acid biosynthesis protein F; Responsible for the polymerization of the main chain of the major teichoic acid by sequential transfer of glycerol phosphate units from CDP-glycerol to the disaccharide linkage unit. Synthesizes polymers of approximately 35 glycerol phosphate units in length.
  
     0.557
isaA
Immunodominant antigen A, putative; Is able to cleave peptidoglycan; Belongs to the transglycosylase family. IsaA subfamily.
 
     0.459
SERP2199
Hypothetical protein; Identified by Glimmer2; putative.
       0.438
SERP2196
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
       0.435
SERP2195
Alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase, putative; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852.
  
    0.432
gpxA-2
Glutathione peroxidase; Identified by similarity to EGAD:45646; match to protein family HMM PF00255; Belongs to the glutathione peroxidase family.
       0.411
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.