STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcAArginine deiminase; Identified by similarity to SP:O53088; match to protein family HMM PF02274; match to protein family HMM PF02726; match to protein family HMM TIGR01078. (411 aa)    
Predicted Functional Partners:
arcB-1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
 
 0.990
arcB-2
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
 
 0.981
arcC
Carbamate kinase; Identified by similarity to SP:P35836; match to protein family HMM PF00696; match to protein family HMM TIGR00746.
 
  
 0.954
argH
Argininosuccinate lyase; Identified by similarity to EGAD:108136; match to protein family HMM PF00206; match to protein family HMM TIGR00838.
     
 0.919
argG
Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
 0.914
SERP1451
Nitric-oxide synthase, oxygenase subunit; Catalyzes the production of nitric oxide. Belongs to the NOS family. Bacterial NOS oxygenase subfamily.
     
  0.900
arcD
Arginine/ornithine antiporter; Identified by similarity to EGAD:21315; match to protein family HMM PF00324; match to protein family HMM TIGR00905.
 
  
 0.872
SERP1778
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA2063; match to protein family HMM PF01168.
 
  
  0.843
SERP0883
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA1197.
      
 0.689
argR-2
Transcriptional regulator, ArgR family; Regulates arginine biosynthesis genes.
     
 0.685
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.