STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP2404Iron compound ABC transporter, iron compound-binding protein, putative. (324 aa)    
Predicted Functional Partners:
SERP2405
Sensor histidine kinase; Probable member of the two-component regulatory system SERP2405/SERP2406. May activate SERP2406 by phosphorylation (By similarity).
 
 
   0.929
SERP2406
DNA-binding response regulator, AraC family; Probable member of the two-component regulatory system SERP2405/SERP2406.
 
     0.918
agrC
Accessory gene regulator protein C; Identified by similarity to GP:2258296; match to protein family HMM PF02518.
   
   0.594
glpT
Glycerol-3-phosphate transporter; Identified by similarity to EGAD:8163; match to protein family HMM PF00083; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881.
  
  
 0.530
potA
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
  
 0.524
SERP2069
Major facilitator superfamily protein; Identified by match to protein family HMM PF00083.
  
  
 0.476
SERP2380
Drug transporter, putative; Identified by match to protein family HMM PF00083.
  
  
 0.476
SERP2403
Conserved domain protein.
       0.448
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.