STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP2461CRISPR-associated protein, TM1811 family; Identified by similarity to OMNI:MT2890; match to protein family HMM TIGR01871; match to protein family HMM TIGR01872. (757 aa)    
Predicted Functional Partners:
SERP2458
CRISPR-associated protein, TM1808 family; Identified by similarity to EGAD:160971; match to protein family HMM PF03757; match to protein family HMM TIGR01903.
 
 
 0.998
SERP2459
CRISPR-associated protein, TM1792 family; Identified by similarity to EGAD:161002; match to protein family HMM PF03787; match to protein family HMM TIGR01867.
 
 
 0.998
SERP2460
CRISPR-associated protein, TM1810 family; Identified by similarity to EGAD:165031; match to protein family HMM TIGR01870.
 
 
 0.998
SERP2457
CRISPR-associated protein, TM1807 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899.
 
 
 0.997
SERP2455
Conserved hypothetical protein; Identified by similarity to EGAD:161071; match to protein family HMM TIGR01877.
 
  
 0.941
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.934
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.871
SERP2456
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.752
ebh
Cell wall associated fibronectin-binding protein; Identified by similarity to OMNI:SA1472; match to protein family HMM PF01468; match to protein family HMM PF02370; match to protein family HMM PF02524; match to protein family HMM PF04508; match to protein family HMM PF04650; match to protein family HMM TIGR01168.
    
   0.420
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.