Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SERP2467Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0058. (167 aa)    
Predicted Functional Partners:
SERP2468
Conserved hypothetical protein; Identified by similarity to GP:14021030.
       0.751
SERP2496
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0063.
  
     0.748
SERP2483
Conserved hypothetical protein; Identified by similarity to GP:14245843.
  
     0.713
SERP2279
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA2544.
  
     0.584
SERP2466
Hypothetical protein; Identified by Glimmer2; putative.
       0.547
SERP0367
Lipoprotein, putative.
  
     0.516
SERP2498
Cassette chromosome recombinase A; Identified by similarity to OMNI:NTL01SA0062; match to protein family HMM PF00239.
  
     0.443
SERP2499
Cassette chromosome recombinase B; Identified by similarity to OMNI:NTL01SA0061; match to protein family HMM PF00239.
  
     0.401
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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