Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SERP2499Cassette chromosome recombinase B; Identified by similarity to OMNI:NTL01SA0061; match to protein family HMM PF00239. (542 aa)    
Predicted Functional Partners:
SERP2498
Cassette chromosome recombinase A; Identified by similarity to OMNI:NTL01SA0062; match to protein family HMM PF00239.
 
    
0.854
cscA
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
      
 0.787
SERP1537
DNA polymerase III, alpha subunit, putative.
      
 0.770
SERP1538
DNA polymerase III, alpha subunit, truncation; Identified by match to protein family HMM PF02231; match to protein family HMM PF02811.
      
 0.770
SERP2496
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0063.
 
     0.720
SERP2497
Hypothetical protein; Identified by Glimmer2; putative.
       0.672
SERP2504
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0058.
 
     0.500
SERP2495
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0064.
       0.458
SERP2500
Hypothetical protein; Identified by Glimmer2; putative.
       0.455
SERP2483
Conserved hypothetical protein; Identified by similarity to GP:14245843.
 
     0.452
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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