STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpA-3Identified by similarity to EGAD:7942; match to protein family HMM PF00589; match to protein family HMM PF02899. (361 aa)    
Predicted Functional Partners:
tnpC-3
Transposase C; Identified by similarity to EGAD:6135.
 
     0.947
tnpB-3
Identified by similarity to EGAD:8390; match to protein family HMM PF00589; match to protein family HMM PF02899.
 
    
0.846
SERP1464
Tn554-related, transposase C; Identified by similarity to EGAD:6135.
 
     0.784
tnpC-1
Tn554, transposase C; Identified by similarity to EGAD:6135.
 
     0.775
tnpC-2
Tn554, transposase C; Identified by similarity to EGAD:6135.
 
     0.775
SERP1465
Tn554-related, transposase B; Identified by similarity to EGAD:8390; match to protein family HMM PF00589.
 
     0.765
spC
Streptomycin 3''-adenylyltransferase; Identified by similarity to EGAD:9921; match to protein family HMM PF01909.
 
     0.570
SERP2505
RadC domain protein; Identified by match to protein family HMM PF04002.
 
     0.561
SERP2504
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SA0058.
       0.467
hslV
Heat shock protein HslVU, ATPase subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
    0.458
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.