STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0027Two component sensor kinase. (881 aa)    
Predicted Functional Partners:
Atu4047
Two component sensor kinase/response regulator hybrid.
  
 
 0.964
Atu0024
Conserved hypothetical protein.
 
     0.949
Atu0026
Conserved hypothetical protein.
 
     0.941
Atu0527
Two component sensor kinase/response regulator hybrid.
  
 
 0.935
uvrD
ATP-dependant DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
  
 0.931
Atu4805
Two component sensor kinase/response regulator hybrid.
 
 
0.914
Atu0025
Conserved hypothetical protein.
 
     0.903
Atu1362
Two component sensor kinase.
 
 
0.894
Atu2332
Two component sensor kinase/response regulator hybrid.
  
 
 0.861
chvI
Two component response regulator.
 
 
 0.853
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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