Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Atu0396 | Atu3356 | Atu0396 | Atu3356 | Coenzyme A transferase. | NADP-dependent malic enzyme. | 0.599 |
Atu0396 | acs | Atu0396 | Atu2745 | Coenzyme A transferase. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.939 |
Atu0396 | cisY | Atu0396 | Atu1392 | Coenzyme A transferase. | Citrate synthase; Belongs to the citrate synthase family. | 0.478 |
Atu0396 | fumC | Atu0396 | Atu1616 | Coenzyme A transferase. | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.408 |
Atu0396 | glcB | Atu0396 | Atu0047 | Coenzyme A transferase. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.934 |
Atu0396 | maeB | Atu0396 | Atu1652 | Coenzyme A transferase. | NADP-dependent malic enzyme. | 0.599 |
Atu3356 | Atu0396 | Atu3356 | Atu0396 | NADP-dependent malic enzyme. | Coenzyme A transferase. | 0.599 |
Atu3356 | aceA | Atu3356 | Atu0607 | NADP-dependent malic enzyme. | Isocitrate lyase. | 0.786 |
Atu3356 | acs | Atu3356 | Atu2745 | NADP-dependent malic enzyme. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.617 |
Atu3356 | cisY | Atu3356 | Atu1392 | NADP-dependent malic enzyme. | Citrate synthase; Belongs to the citrate synthase family. | 0.934 |
Atu3356 | fumC | Atu3356 | Atu1616 | NADP-dependent malic enzyme. | Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.972 |
Atu3356 | glcB | Atu3356 | Atu0047 | NADP-dependent malic enzyme. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.981 |
Atu3356 | glcF | Atu3356 | Atu0667 | NADP-dependent malic enzyme. | Glycolate oxidase iron-sulfur subunit. | 0.489 |
Atu3356 | maeB | Atu3356 | Atu1652 | NADP-dependent malic enzyme. | NADP-dependent malic enzyme. | 0.949 |
Atu3356 | mdh | Atu3356 | Atu2639 | NADP-dependent malic enzyme. | Putative malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.972 |
Atu3356 | mqo | Atu3356 | Atu0811 | NADP-dependent malic enzyme. | Malate:quinone oxidoreductase. | 0.944 |
aceA | Atu3356 | Atu0607 | Atu3356 | Isocitrate lyase. | NADP-dependent malic enzyme. | 0.786 |
aceA | acs | Atu0607 | Atu2745 | Isocitrate lyase. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.453 |
aceA | glcB | Atu0607 | Atu0047 | Isocitrate lyase. | Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. | 0.998 |
aceA | glcF | Atu0607 | Atu0667 | Isocitrate lyase. | Glycolate oxidase iron-sulfur subunit. | 0.916 |
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