Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
pbpCPenicillin-binding protein. (764 aa)    
Predicted Functional Partners:
pbpB1
Penicillin binding protein 2.
 
 
 0.984
pbpB
Penicillin-binding protein.
 
 
0.969
mrcA
Penicillin-binding protein 1a.
 
 
0.940
mtgA
Monofunctional biosynthesis peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
0.927
pbpC-2
Penicillin binding protein.
  
  
0.922
Atu2321
D-alanyl-D-alanine carboxypeptidase (penicillin binding protein); Belongs to the peptidase S11 family.
  
 
 0.916
Atu0931
Penicillin binding protein.
  
  
 
0.915
dac
Penicillin binding protein; Belongs to the peptidase S11 family.
   
 
 0.906
ftsW
Cell division protein; Belongs to the SEDS family.
 
 
 
 0.784
Atu1700
Lipoprotein.
 
  
 0.710
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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