Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Atu0113Two component sensor kinase; Member of the two-component regulatory system DctB/DctD involved in the transport of C4-dicarboxylates. DctB functions as a membrane-associated protein kinase that phosphorylates DctD in response to environmental signals. (622 aa)    
Predicted Functional Partners:
dctD
Two component response regulator.
 0.997
dctD-2
Two component response regulator for C4-dicarboxylate transport.
 0.975
dctB
Two component sensor kinase for C4-dicarboxylate transport.
  
  
 
0.918
Atu0115
Hypothetical protein.
       0.773
Atu4047
Two component sensor kinase/response regulator hybrid.
  
 
 0.740
Atu4805
Two component sensor kinase/response regulator hybrid.
 
 
0.679
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
       0.585
Atu0527
Two component sensor kinase/response regulator hybrid.
  
 
 0.564
flgD
Hook formation protein.
   
    0.554
Atu1362
Two component sensor kinase.
  
 
 0.408
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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