STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu0147Conserved hypothetical protein. (168 aa)    
Predicted Functional Partners:
Atu0148
Atu0148-1 mutant of a conserved hypothetical protein.
 
     0.961
ctpF
Components of type IV pilus.
 
  
 0.889
ctpC
Components of type IV pilus.
 
  
 0.868
Atu3868
Hypothetical protein.
 
   
 0.826
ctpB
Components of type IV pilus, prepilin peptidase.
 
  
 0.823
Atu0226
PilQ.
 
  
 0.823
ctpH
Components of type IV pilus.
 
  
 0.820
ctpE
Components of type IV pilus.
 
     0.784
Atu1349
Hypothetical protein.
  
    0.781
Atu0215
Conserved hypothetical protein.
 
  
 0.779
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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