STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0148Atu0148-1 mutant of a conserved hypothetical protein. (198 aa)    
Predicted Functional Partners:
ctpF
Components of type IV pilus.
 
  
 0.928
ctpC
Components of type IV pilus.
 
  
 0.912
Atu0147
Conserved hypothetical protein.
 
     0.909
ctpH
Components of type IV pilus.
 
  
 0.887
ctpB
Components of type IV pilus, prepilin peptidase.
 
  
 0.855
ctpI
Components of type IV pilus.
 
    0.821
ctpD
Component of type IV pilus; Belongs to the bacterial secretin family.
 
  
 0.820
Atu3868
Hypothetical protein.
 
    0.808
Atu0215
Conserved hypothetical protein.
 
  
 0.806
Atu0226
PilQ.
 
  
 0.795
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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