STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0188ABC transporter, membrane spanning protein (peptide). (364 aa)    
Predicted Functional Partners:
Atu0189
ABC transporter, membrane spanning protein (peptide).
 
 
 0.999
Atu0190
ABC transporter, nucleotide binding/ATPase protein (peptide); Belongs to the ABC transporter superfamily.
 
 
 0.997
Atu0187
ABC transporter, substrate binding protein (peptide).
 
 
 0.994
Atu1774
ABC transporter, substrate binding protein (peptide).
 
  
 0.899
Atu4256
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
 
  
 0.634
Atu4664
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
 
  
 0.581
anmK
Conserved hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
  
   
 0.525
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
   
  
 0.523
Atu0026
Conserved hypothetical protein.
     
 0.464
murA
UDP-N-acetylglucosamine; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
      
 0.461
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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