STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0189ABC transporter, membrane spanning protein (peptide). (381 aa)    
Predicted Functional Partners:
Atu0188
ABC transporter, membrane spanning protein (peptide).
 
 
 0.999
Atu0190
ABC transporter, nucleotide binding/ATPase protein (peptide); Belongs to the ABC transporter superfamily.
 
 
 0.998
Atu0187
ABC transporter, substrate binding protein (peptide).
 
 
 0.994
Atu1774
ABC transporter, substrate binding protein (peptide).
 
  
 0.900
Atu4256
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
 
  
 0.731
Atu4664
ABC transporter, nucleotide binding/ATPase protein (oligopeptide); Belongs to the ABC transporter superfamily.
 
  
 0.700
Atu1709
Glycosyl hydrolase.
   
  
 0.607
anmK
Conserved hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
  
   
 0.555
Atu3377
ABC transporter, nucleotide binding/ATPase protein (peptide); Belongs to the ABC transporter superfamily.
 
     0.498
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
   
  
 0.490
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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