STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0199ABC transporter, substrate binding protein (proline/glycine/betaine). (303 aa)    
Predicted Functional Partners:
Atu0196
ABC transporter, membrane spanning protein (proline/glycine/betaine).
 
 0.999
Atu0198
ABC transporter, membrane spanning protein (proline/glycine/betaine).
 
 0.999
Atu0197
ABC transporter, nucleotide binding/ATPase protein (proline/glycine/betaine).
 
 0.998
Atu0894
ABC transporter, membrane spanning protein.
 
 
  
 0.905
proW
ABC transporter, membrane spanning protein (proline/glycine betaine).
 
 
  
 0.905
Atu4045
ABC transporter, membrane spanning protein (glycine betaine).
 
 
  
 0.873
Atu0200
Conserved hypothetical protein.
       0.498
gntK
Gluconokinase.
  
    0.460
Atu4259
ABC transporter, substrate binding protein (oligopeptide).
  
  
 0.447
phnD
ABC transporter, substrate binding protein (phosphonate).
    
  0.426
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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