Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atu0210Conserved hypothetical protein. (114 aa)    
Predicted Functional Partners:
Atu0211
Conserved hypothetical protein.
       0.805
Atu0011
Transcriptional regulator.
  
 
   0.561
Atu0212
Hypothetical protein.
       0.532
Atu1455
Conserved hypothetical protein.
  
     0.500
Atu1428
Conserved hypothetical protein.
  
     0.481
Atu1862
Conserved hypothetical protein.
  
     0.468
Atu2124
Transcriptional regulator, ArsR family.
 
   
 0.460
Atu0728
Conserved hypothetical protein.
  
     0.442
Atu0209
Conserved hypothetical protein.
       0.430
Atu0730
Conserved hypothetical protein.
  
     0.407
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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