Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctpIComponents of type IV pilus. (328 aa)    
Predicted Functional Partners:
ctpH
Components of type IV pilus.
 
 
 0.999
ctpG
Component of type IV pilus.
 
 
 0.998
ctpF
Components of type IV pilus.
 
 
 0.997
ctpC
Components of type IV pilus.
 
 
 0.996
ctpD
Component of type IV pilus; Belongs to the bacterial secretin family.
 
 
 0.994
Atu1609
Conserved hypothetical protein.
 
 
 0.956
ctpE
Components of type IV pilus.
 
   
 0.901
ctpA
Components of type IV pilus, pilin subunit.
 
  
 0.890
Atu0215
Conserved hypothetical protein.
 
  
 0.851
ctpB
Components of type IV pilus, prepilin peptidase.
 
     0.845
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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