STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0232Conserved hypothetical protein; Belongs to the UPF0339 family. (62 aa)    
Predicted Functional Partners:
Atu8147
Conserved hypothetical protein.
  
   0.918
Atu0457
Conserved hypothetical protein.
   
 
 0.835
Atu0461
Conserved hypothetical protein.
   
   0.708
Atu0570
Chemotaxis protein.
    
 
 0.679
Atu4562
Hypothetical protein.
    
 
 0.679
Atu0445
Hypothetical protein.
    
   0.668
guaA
GMP synthase.
       0.579
Atu3875
Aldolase.
   
    0.563
ohr
Organic hydroperoxide resistance protein.
   
    0.547
Atu1003
Conserved hypothetical protein.
   
    0.547
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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