Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pecSTranscriptional regulator, MarR family. (161 aa)    
Predicted Functional Partners:
pecM
Regulator protein pecM.
 
   
 0.944
slyA
Transcriptional regulator, MarR family.
  
   
 0.577
Atu0271
Transcriptional regulator, GntR family.
  
    0.523
tetR
Transcriptional regulator, TetR family.
  
   
 0.521
ohr
Organic hydroperoxide resistance protein.
  
  
 0.490
Atu4504
Transcriptional regulator, MarR family.
  
     0.487
ohrR
Transcriptional regulator, MarR family.
      
 0.477
fadB-2
enoyl-CoA hydratase.
     
 0.474
Atu3481
Enoyl-CoA hydratase/isomerase family protein.
   
  
 0.463
Atu3505
enoyl-CoA hydratase.
   
  
 0.463
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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