STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atu0286Conserved hypothetical protein. (373 aa)    
Predicted Functional Partners:
Atu0287
Conserved hypothetical protein.
 
  
 0.981
Atu0285
Conserved hypothetical protein.
 
  
 0.974
Atu0288
Conserved hypothetical protein.
 
  
 0.961
tspO
Tryptophan-rich sensory protein.
       0.671
Atu1157
Conserved hypothetical protein.
  
     0.610
pfs
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase.
       0.494
Atu0283
Conserved hypothetical protein.
       0.489
Atu1182
Conserved hypothetical protein.
  
     0.458
Atu8095
Conserved hypothetical protein.
  
     0.448
Atu4492
Conserved hypothetical protein.
  
     0.445
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.